Number Six (Teresa Palmer) carries a Lorian energy pistol which, since she's a good guy, fires blue energy rounds. She draws it after discarding her M79 and uses it for the duration of the battle in the school.
Special
Mogadorian Assault Rifle
The Mogadorian's standard-issue weapon a a large assault rifle that, since they're bad guys, fire red energy bolts. The weapon seems to be partialy based off of a Mk. 46 machine gun and can fire semi-automatic or three-round bursts.
Mogadorian Carbine
One of the Mogadorians in the hallway carries what seems to be a carbine version of the assault rifle, with no stock and a shorter barrel.
Special
Mogadorian Glove Rifle
Some of the Mogadorians carry a smaller rifle which has the trigger unit concealed in a housing they stick their hand into. Sam obtains one and later unhesitatingly blasts a Mogadorian.
Mogadorian Heavy Blaster
The Mogadorian Commander carries a massive heavy blaster capable of throwing John backward even if he deflects the shot.
Power Cells
While they are not strictly speaking weapons, the Commander's power cells for his heavy blaster are detonated by Number 4's telekinesis, obliterating the Commander and wrecking the football stadium.
Energy grenade
A Mogadorian throws a fictional energy grenade at Number Six in the school cafeteria. In true Hollywood fashion, the grenade produces a massive fireball (red, of course) and throws Six twenty feet with no injuries.